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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAAAGTTGCAGAGGGTATTGATTTTGACCGGCACTATGGTCGCCTTGTGATTATGTATGGTGTACCATTTCAATACACCCTCAGCAGgtacttaaaacctcatcatatccatatctgtgtatatagtagtaagtttatctcatgaattatcgtaggtaatgataattactagttaattaatggagca...

Basic information

species Physcomitrella patens
transcript PP1S145_26V6.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S145_26V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 7
GGGCAAAGTTGCAGAGGGTATTGATTTTGACCGGCACTATGGTCGCCTTGTGATTATGTATGGTGTACCATTTCAATACACCCTCAGCAGgt----acttaaaacct---catcatatccatatctgtgtatatagtagtaagtttat-ctcatgaattatcgtaggtaatgataattactagttaattaatggagca----------------------------------------------------------------------------
||||||||| || || |||||||||||||| || ||||||||  | |||||||| |||| |||||| || || || ||||| ||||||||||    |||||    ||   | | | |||||| | | |||  |       |  | ||| |    | ||||     |    |   |||   |  | |  | ||  | ||                                                                            
GGGCAAAGTAGCCGAAGGTATTGATTTTGATCGACACTATGGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAGgtgaggacttattgtctgaacttaagatccatttttttgtgcaacccttgatctctatacctgagcattacttctgtgcctacgaatggttcatcatattataaaacattatctactcaatagcaacatccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcag

upper sequence: PP1S145_26V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 2
GGGCAAAGTTGCAGAGGGTATTGATTTTGACCGGCACTATGGTCGCCTTGTGATTATGTATGGTGTACCATTTCAATACACCCTCAGCAGgt-----------acttaaaacctcatcatatccatatctgtgtatatagtagtaagtt-tatctcatgaattat-cgtaggtaatgataattactagttaattaatggagca--------------------------------------
|||||||||||| || |||||||||||||| |||||||||||  |  | || || |||| |||||| || || || |||||  | ||  |||           || |  | | ||| |     |    |  ||  | | ||   ||||| ||  |  |    |    ||| | | |  |||||  | ||   ||||||                                           
GGGCAAAGTTGCTGAAGGTATTGATTTTGATCGGCACTATGGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCGgtgagttttgttcacattgagcttcaaccctctctaccccttgattttggtgccaagttataggtagtttgatgcatgtacgcagttgtaatttgtggtggcttaatgatttcataacagttgcctttgtttgtctctatacgatttgtag