1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGATTTGAATTGGAATTTAGTGAATTGCGAGAGTACACACATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctttaaatcattactactattttcttcttttggttgagctgaagtttttgtcttaaatcagagacaccaatgtcaaagttgtgtgaatgaacgtacttaaggtgtaaatctaacagtttgtcctcaatgccatgagcatctcgctgattcttgtcgaaacgtggcacaaattttgcag
species | Physcomitrella patens |
transcript | PP1S143_122V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGACEST: gi|162278762|gb|FC454872.1|FC454872
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGACEST: gi|162164285|gb|FC342100.1|FC342100
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGACEST: gi|162156754|gb|FC333883.1|FC333883
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTGAATTGGAATTTAGTGAATTGCGAGAGTACACACATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctttaaatcattactactattttcttcttttggttgagctgaagtttttgtcttaaatcagagacaccaatgtcaaagttgtgtgaatgaacgtacttaaggtgtaaatctaacagtttgtcctcaatgccatgagcatctcgctgattcttgtcgaaacgtggcacaaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA