Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag

Basic information

species Physcomitrella patens
transcript PP1S10_296V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S10_296V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G163193_T02 (Zea mays), 5'ss of exon 7
TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag
 || | ||  ||  |||| |||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||  ||||||||||  | || |      || ||  |  | |||     |   | || ||||  |||| ||  ||  |  || ||| |    |   ||  ||  |  ||  |    || |                                                 
CGACACCAATTCGGCTGTCATTGTACTAGGGGCAACAAATCGAGCTGATGTTTTGGATCCTGCCCTTAGGCGACCTGGGAGATTTGACCGTGTAGTTA------TGgttagtttcccttctcaacaagatatggtgc-tattg-tgttcaactt-ttctcagatgtcattaatcatt--aatgtgaacatgacag-------------------------------------------------

upper sequence: PP1S10_296V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G072865_T01 (Zea mays), 5'ss of exon 7
TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag
||| | || |||  |||| |||||| | ||||| || |||||||||||||||||||||||||| |||||||| |||||  ||||||||||  | || |  ||  |  |||       |  ||   | | |  |      |||| ||  ||| |  || ||| |    |   || | | |||   ||                                                          
TGATACCAACTCGGCTGTCATTGTATTGGGGGCAACAAATCGAGCTGATGTTTTGGATCCTGCCCTTAGGCGCCCTGGGAGATTTGACCGTGTGGTTATGgt--tagtttgccttcttaacaagatatgctcc-----tattg-tgttcagctt-ttctcagatgtcattaatgtctacatgacag----------------------------------------------------------

upper sequence: PP1S10_296V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag
||| || |||||  | |||||||| ||||| |||||||||||||||||||| || || ||||| ||  | || |||||  ||||||| ||  |||| || ||    |  ||    |  ||  ||  |   ||| ||||         | | |   || ||| |   |   ||  |||  ||   ||                                                          
TGACAGTAGCTCTGCAGTTATTGTTCTTGGAGCTACCAATCGAGCTGATGTCTTAGACCCTGCCCTGCGTCGGCCTGGGAGATTTGATCGTGTTGTTACGgt----tagtagaatatctggctctgtatgatcatgca-------atgtaatacattgtcaaagctatctgacattta-atttcag----------------------------------------------------------

upper sequence: PP1S10_296V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ30338 (Selaginella moellendorffii), 5'ss of exon 7
TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag
 |||  |   ||||||||||| ||  |||| ||||| |||||||| |||||| | || || || || |||||||| ||||||||||| |||||||| |  ||      ||| |  | |||||     |   || |  ||| || |   |||                                                                                             
CGAGTCCGCATCAACTGTTATCGTGATTGGAGCTACGAATCGAGCAGATGTTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaattaagt-atttgcaaggaat-tgtcttttacactg-tctccag---------------------------------------------------------------------------------------------

upper sequence: PP1S10_296V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ33021 (Selaginella moellendorffii), 5'ss of exon 7
TGAGAGCAGCTCAACTGTTATTGTACTTGGGGCTACCAATCGAGCTGATGTTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgttttatgccacttgcatcctttacatcgtgcacattgatgagcagttagttatcacaatcaaacgatttttccatcgtagaaggtacgggacatatttgtgtttgcaaattctgatcgatctaatttgtttggaatag
 |||  |   ||||||||||| ||  |||| ||||| |||||||| |||||| | || || || || |||||||| ||||||||||| |||||||| |  ||       |       |||||     |   || |  ||| || |   |||                                                                                             
CGAGTCCGCATCAACTGTTATCGTGATTGGAGCTACGAATCGAGCAGATGTTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaaattaagtttttgcaaggaat-tgtcttttacactg-tctccag---------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100401189|gb|BY990875.1|BY990875
EST:     TTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACT                         GTGGAGCCTCCAGATAGGCAAGGTCGCGAGGAAATTTTGACTGTTCATGTG
genomic: TTTTGGATCCTGCTCTTAGGCGACCTGGACGATTTGACCGGATTGTCACTgtattgtttt ... tttggaatagGTGGAGCCTCCAGATAGGCAAGGTCGCGAGGAAATTTTGACTGTTCATGTG