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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCAGATTGAGACGATAAGCTTCAGCGGAAGGgtaagtggttttttatttaaccgtaaagcgcttggtcttaatctcagtatcctcagctgatgtggattgtaacttcaagttcgaaatcttttctagatttgctaacaagttaagtgattgttccag

Basic information

species Physcomitrella patens
transcript PP1S101_82V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162253331|gb|FC429757.1|FC429757
EST:     CGATAAGCTTCAGCGGAAGG                         ACGTCAGTATTCGTTCCCAACATACAGAAGTATACTGGACCTGAGCTGAAA
genomic: CGATAAGCTTCAGCGGAAGGgtaagtggtt ... attgttccagACGTCAGTATTCGTTCCCAACATACAGAAGTATACTGGACCTGAGCTGAAA
EST: gi|162179943|gb|FC356014.1|FC356014
EST:     GAAATCAGATTGAGACGATAAGCTTCAGCGGAAGG                         ACGTCAGTATTCGTTCCCAACATACAGAAG
genomic: GAAATCAGATTGAGACGATAAGCTTCAGCGGAAGGgtaagtggtt ... attgttccagACGTCAGTATTCGTTCCCAACATACAGAAG
EST: gi|162219002|gb|FC394909.1|FC394909
EST:     GAAATCAGATTGAGACGATNAGCTTCAGCGGAAGG                         ACGTCAGTATTCG
genomic: GAAATCAGATTGAGACGATAAGCTTCAGCGGAAGGgtaagtggtt ... attgttccagACGTCAGTATTCG