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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTGATGGTGCTGGAGGGTGTTGGGCCCGTGTAGGGTTGTGAGATCATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcctgtaccggccggattctctagcgaagagctgtgttttctggggagatgttaaccttggaatgaggaggttccggtctgtgtgagttctggg...

Basic information

species Physcomitrella patens
transcript PP1S9_333V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18354900|gb|BJ186959.1|BJ186959
EST:     ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAG                         GTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
genomic: ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcct ... tctagtgcagGTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
EST: gi|18327895|gb|BJ159899.1|BJ159899
EST:     ATCCATAGAGGTGCTGAGGTTTGCGATTGTCTGGGCATGACGAACGTGAG                         GTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
genomic: ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcct ... tctagtgcagGTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
EST: gi|18366844|gb|BJ198924.1|BJ198924
EST:     ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAG                         GTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
genomic: ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcct ... tctagtgcagGTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
EST: gi|18368178|gb|BJ200263.1|BJ200263
EST:     ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAG                         GTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
genomic: ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcct ... tctagtgcagGTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
EST: gi|18371943|gb|BJ203545.1|BJ203545
EST:     ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAG                         GTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA
genomic: ATCCATAGAGGTGCTGAGGTTTGCGATTGACTGGGCATGACGAACGTGAGgtgggttcct ... tctagtgcagGTATTCGTATGGCGATGAGCGATTGATGTTTAAAGACGGGAATTTCGTTGA