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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAGACATCGTGGCCACATCTTCGGCTGGAGGAGCGCTGGACAGAATTCCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgccgttttcttctccaggagtgatttgaagcgcttttagaaggaatagattttgttgtttttggaaaacttttcggtggagtttcgattactt...

Basic information

species Physcomitrella patens
transcript PP1S9_212V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360457|gb|BJ192519.1|BJ192519
EST:     CTGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGG                         ATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
genomic: CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgcc ... gattgtacagATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
EST: gi|18365765|gb|BJ197842.1|BJ197842
EST:     CTGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGG                         ATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
genomic: CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgcc ... gattgtacagATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
EST: gi|18367233|gb|BJ199314.1|BJ199314
EST:     CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGG                         ATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
genomic: CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgcc ... gattgtacagATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
EST: gi|67573726|gb|BJ946550.1|BJ946550
EST:     CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGG                         ATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
genomic: CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgcc ... gattgtacagATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
EST: gi|100389063|gb|BY952267.1|BY952267
EST:     CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGG                         ATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG
genomic: CCGACCTGTTGGGTTGCGGGGCGGACGAGGCTCTCCTGATCTTCAATTGGgtacgctgcc ... gattgtacagATGGAGAAAGTAGGTGGTGTTTTCAAGTGTTAATGGGCGAGGTCAACGTTG