1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCACCTGCTCGCCTTCGGAGTCCATTCAAGGCCTCTCCTCCGCACTCCTCCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttacgcttgtgcttcgttctgctttttatttttttcgtttcttctttgaactcttattggctacggttgacgacgtttgatgcgtttttgatgg...
species | Physcomitrella patens |
transcript | PP1S90_134V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|18372531|gb|BJ204133.1|BJ204133
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|18366005|gb|BJ198083.1|BJ198083
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|100424327|gb|BY958429.1|BY958429
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|18360741|gb|BJ192804.1|BJ192804
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|18360443|gb|BJ192505.1|BJ192505
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|67574551|gb|BJ947375.1|BJ947375
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCGEST: gi|18358297|gb|BJ190356.1|BJ190356
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
EST: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAG AATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
genomic: CCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttac ... tcgtatgaagAATTCCTATACCACGAAGCAGTGATCAAGGGCTGAGAATCGATCCGTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACCTGCTCGCCTTCGGAGTCCATTCAAGGCCTCTCCTCCGCACTCCTCCTCCTGAGTGTGTCGCACAGCTTCTTCTGCTTGTTCCTGCAGCTGCGAGgtgctcttacgcttgtgcttcgttctgctttttatttttttcgtttcttctttgaactcttattggctacggttgacgacgtttgatgcgtttttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC