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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTTCGGAGCGTTTCGGAGCGGCTTGAGAAAACCCAGTAGTTGTGGTTGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggtttttatggtctgttgggtggtttgattgtcactctgaccctaacacagactgagacaggttgtgagaaaaattggtgcgttttccttgggacga...

Basic information

species Physcomitrella patens
transcript PP1S90_133V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508255|gb|BJ941124.1|BJ941124
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|162184090|gb|FC358836.1|FC358836
EST:     GCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: GCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67576060|gb|BJ948884.1|BJ948884
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100385472|gb|BY969809.1|BY969809
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67573146|gb|BJ945970.1|BJ945970
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100438252|gb|BY979863.1|BY979863
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100450655|gb|CJ974372.1|CJ974372
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAANAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|208358499|gb|DC930631.1|DC930631
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67578091|gb|BJ950258.1|BJ950258
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTTTCGGAGCGTTTCGGAGCGGCTTGAGAAAACCCAGTAGTTGTGGTTGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggtttttatggtctgttgggtggtttgattgtcactctgaccctaacacagactgagacaggttgtgagaaaaattggtgcgttttccttgggacga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG