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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTAAGAAGGCATATGAGTTATCAGTTCTTTGCGACATCGACATCGCATTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTACAGTAATTGCAGgttcgaatctcgatcttcacagataatgcgcgtttattcatgtcaattgcagtctttgtggacgtcaaagagatccttgcagattgctaagttctacagt...

Basic information

species Physcomitrella patens
transcript PP1S8_95V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_95V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G334225_T01 (Zea mays), 5'ss of exon 1
TCATTAAGAAGGCATATGAGTTATCAGTTCTTTGCGACATCGACATCGCATTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTAC---AGTAATTGCAGgttcg-------aatctcgatcttcacagataatgcgcgtttattcatg--tcaattgcagtctttgtggacgt-caaagagatccttgcagattgctaagttctacagt--------------
   | |||||||| |||||| | || ||||| |||||||||||||||||  | ||||||||||| || ||       ||||  || | |    | |   |||||| ||       |||  | | |||| | |    |     |   | ||||  ||||||        |  |  ||  | ||   |   ||||  |   || | || || | |              
---TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaac--cttaattttataataataataatataag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22773462|gb|AJ487541.1|AJ487541
EST:     TTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTACAGTAATTGCAG                         TATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAA
genomic: TTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTACAGTAATTGCAGgttcgaatct ... tgtgatgcagTATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAA