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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGATGGTGCTCAGCGAGTTAAAGGGCATGAAGGAGGTGGACTCCTCCAACGTAGACTCCATCTATGCTTCTCGTTACGTCCAAAATGAACTTCCCAGgttcatccctcactgtgtcattgttgttctgaatcactttccatctactcttgtagattaagaactgagattataccttgagaggaacctgcatgctctgtttcttcacaagtttggtaactcaaacttgcttatcgcag

Basic information

species Physcomitrella patens
transcript PP1S8_163V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372305|gb|DC936449.1|DC936449
EST:     AACGTAGACTCCATCTATGCTTCTCGTTACGTCCAAAATGAACTTCCCAG                         ATGGAGTTTGCCTGAGCGAGAATTTCCCAAGGATGCCGCGTACCAGGTGAT
genomic: AACGTAGACTCCATCTATGCTTCTCGTTACGTCCAAAATGAACTTCCCAGgttcatccct ... cttatcgcagATGGAGTTTGCCTGAGCGAGAATTTCCCAAGGATGCCGCGTACCAGGTGAT
EST: gi|67575286|gb|BJ948110.1|BJ948110
EST:     AACGTAGACTCCATCTATGCTTCTCGTTACGTCCAAAATGAACTTCCCAG                         ATGGAGTTTGCCTGAGCGAGAATTTCCCAAGGATGCCGCGTACCAGGTGAT
genomic: AACGTAGACTCCATCTATGCTTCTCGTTACGTCCAAAATGAACTTCCCAGgttcatccct ... cttatcgcagATGGAGTTTGCCTGAGCGAGAATTTCCCAAGGATGCCGCGTACCAGGTGAT