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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCTTTTCTTGAGGAACAATTCCGTCGGTATGCGAACCTGAAGCAGCAGTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAGgtttgattttacaaatgcaaccccatcatttttctctgtttagataattatgtgttcataattaaacagagttcgagttttttttaacaggaaagcatactctctctctctctctctctctctctctctctcattgaagcagattgttacttacttgtgaagattctgtctgagggttttcgcgatttgtgtag

Basic information

species Physcomitrella patens
transcript PP1S89_154V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376956|gb|DC936762.1|DC936762
EST:     GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAG                         GGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
genomic: GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAGgtttgatttt ... atttgtgtagGGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
EST: gi|100427974|gb|BY959219.1|BY959219
EST:     GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAG                         GGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
genomic: GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAGgtttgatttt ... atttgtgtagGGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
EST: gi|162272815|gb|FC448803.1|FC448803
EST:     GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAG                         GGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
genomic: GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAGgtttgatttt ... atttgtgtagGGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
EST: gi|208363621|gb|DC935330.1|DC935330
EST:     GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAG                         GGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC
genomic: GTTCGTGCACCATTATGGCCGTGACCCTGAACTCTTTGCGCGTGCTCCAGgtttgatttt ... atttgtgtagGGAGAGTGAATCTAATAGGAGAGCACATCGATTACGAGGGTTATTCCGTGC