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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGTTGATGTCCATTTTAATTCTGGGACGGACTGCCGACCGCGTTTGATCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAGgtgatgacgatctgagtactcgctcacagtgtttgtgatttcgggtagccggttgaaaccaggccatggatgtcgcgatttcgtagtgtttgaagccgcc...

Basic information

species Physcomitrella patens
transcript PP1S87_139V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18342758|gb|BJ174793.1|BJ174793
EST:     TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAG                         AGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
genomic: TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAGgtgatgacga ... ctccttacagAGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
EST: gi|100358847|gb|BY946718.1|BY946718
EST:     TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAG                         AGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
genomic: TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAGgtgatgacga ... ctccttacagAGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
EST: gi|208366737|gb|DC931394.1|DC931394
EST:     TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAG                         AGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
genomic: TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAGgtgatgacga ... ctccttacagAGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
EST: gi|100377583|gb|BY986310.1|BY986310
EST:     TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAG                         AGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC
genomic: TCGTGCGCCGGGTTCGAAGCGTCTCCCTTGAGTGGGGAGGCGTGTAGCAGgtgatgacga ... ctccttacagAGTACCTTTGGAGTGTAGCTTCTTGCGAGCACGTGATCGACTCTGATTTGC