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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTACCGGATGGGCACGCTCATCGATAGGTTCGATGAGCACGATGGTCCTGTGAGGGGCGTCGATTTTCACAAGTCGCAGCCTCTGTTTGTTTCTGGAGgttagttttcttctcctcccactgattcgtggcaatttgaggaagctattgctgtggccttgactgatgagatctgctgcctctcagcgtgtcttagcgc...

Basic information

species Physcomitrella patens
transcript PP1S86_189V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S86_189V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA11G12080.1 (Glycine max), 5'ss of exon 1
GACTACCGGATGGGCACGCTCATCGATAGGTTCGATGAGCACGATGGTCCTGTGAGGGGCGTCGATTTTCACAAGTCGCAGCCTCTGTTTGTTTCTGGAGgttagttttcttctcctcccactgattcgtggcaatttgaggaagctattgctgtggccttg-actgatgagatctgctgcctctcagcgtgtcttagcgc
|| ||||| ||||| || ||||| || || ||||||||||| ||||||||||| || || ||| |||| || || || ||||| |||||||| |||||||||   || ||| |  | | |  |   |    | | | ||      ||  | |  | |   || |    | |    |  |   |||  |  | ||| |  | 
GATTACCGAATGGGTACTCTCATTGACAGATTCGATGAGCATGATGGTCCTGTCAGAGGTGTCCATTTCCATAATTCCCAGCCCCTGTTTGTCTCTGGAGgtaccttatctgcaaccctccttatgtttctgta-tctgtaatttctgatccgttagttgtgtatcctttattgttttttggtctgcgtatatctgaatga

upper sequence: PP1S86_189V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA12G04290.2 (Glycine max), 5'ss of exon 1
GACTACCGGATGGGCACGCTCATCGATAGGTTCGATGAGCACGATGGTCCTGTGAGGGGCGTCGATTTTCACAAGTCGCAGCCTCTGTTTGTTTCTGGAGgttagttttcttctcctcc-cactgattcgtggcaatttgaggaagc---tattgctgtggccttgactgatgagatctgctgcctctcagcgtgtcttagcgc
|| ||||| ||||| || ||||| || || ||||||||||| ||||||||||| || || ||| |||| ||||| || ||||| || ||||| |||||||||   || | | |   ||  ||   | |  |   | |   |     |    | ||||    |  |||    | |  | || |     | |  || | || |   
GATTACCGAATGGGGACTCTCATTGACAGATTCGATGAGCATGATGGTCCTGTCAGAGGTGTCCATTTCCACAATTCTCAGCCCCTCTTTGTCTCTGGAGgtaccttatttgcaattctacatacacttcttatactccaattctacatgcactgcttatactctgatcttttacttgtg-tattctttattgt-tgttggt--

upper sequence: PP1S86_189V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv18s0001g13430.t01 (Vitis vinifera), 5'ss of exon 2
GACTACCGGATGGGCACGCTCATCGATAGGTTCGATGAGCACGATGGTCCTGTGAGGGGCGTCGATTTTCACAAGTCGCAGCCTCTGTTTGTTTCTGGAGgt-tagttttcttctcctcccactgattcgtggcaatttgaggaagctattgctgtggccttgactgatgagatctgc---tgcctctcagcgtgtctta-gcgc----
|| ||| | ||||| || || || || || || |||||||||||||| || ||| | || ||  |||| ||||| || ||||| |||||||||||||||||| ||  |||||     ||  ||  ||  ||      ||| | |   ||   || | |  |   |   |     ||||     |  ||  | | || ||| |       
GATTACAGAATGGGGACTCTTATTGACAGATTTGATGAGCACGATGGACCAGTGCGTGGTGTGCATTTCCACAAATCTCAGCCGCTGTTTGTTTCTGGAGgtataaatttctg----tcaaaccaatctgt--ttgcttgtgaa---tacctctatagtttcaccattttgatcctgcgtacactcctgtgggcgtattaagtattatt