Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCCCTCTCTTGCTCCGGCAAGCCTCTTGCTGGATCTCTTCCCCATGGCTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcgtctcctgtacttggctgcattgcgtttttgtcgatgtctgtggtcatgcatttctcctggagtacgttgatcatgtcctagtggggcgag...

Basic information

species Physcomitrella patens
transcript PP1S86_156V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393166|gb|DC907989.1|DC907989
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100440793|gb|BY980613.1|BY980613
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100420462|gb|BY976031.1|BY976031
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162190918|gb|FC368116.1|FC368116
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162199260|gb|FC375096.1|FC375096
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|18369527|gb|BJ201614.1|BJ201614
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67702425|gb|BJ962658.1|BJ962658
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67507784|gb|BJ940662.1|BJ940662
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162236333|gb|FC411452.1|FC411452
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100389555|gb|BY989033.1|BY989033
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162218959|gb|FC395178.1|FC395178
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100394378|gb|BY972039.1|BY972039
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67702738|gb|BJ962971.1|BJ962971
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162153557|gb|FC330145.1|FC330145
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTTCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100425421|gb|BY958586.1|BY958586
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCCCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100363831|gb|BY966192.1|BY966192
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100396366|gb|BY990094.1|BY990094
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162155485|gb|FC330968.1|FC330968
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100352166|gb|BY983072.1|BY983072
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162171442|gb|FC346717.1|FC346717
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162158674|gb|FC335548.1|FC335548
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162183743|gb|FC360660.1|FC360660
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|208376981|gb|DC910815.1|DC910815
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100416539|gb|BY975438.1|BY975438
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|18327439|gb|BJ159442.1|BJ159442
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162165551|gb|FC340662.1|FC340662
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162216599|gb|FC393523.1|FC393523
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|208347100|gb|DC909370.1|DC909370
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|18373797|gb|BJ205375.1|BJ205375
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162181161|gb|FC357606.1|FC357606
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100382379|gb|BY969093.1|BY969093
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162233187|gb|FC409010.1|FC409010
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162179847|gb|FC355918.1|FC355918
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|208349869|gb|DC905993.1|DC905993
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100443668|gb|BY963765.1|BY963765
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100395353|gb|BY953695.1|BY953695
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162220632|gb|FC396844.1|FC396844
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67575170|gb|BJ947994.1|BJ947994
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|208348576|gb|DC913248.1|DC913248
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100399917|gb|BY990686.1|BY990686
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162195313|gb|FC369807.1|FC369807
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67703081|gb|BJ963314.1|BJ963314
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100363427|gb|BY966383.1|BY966383
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162255129|gb|FC430744.1|FC430744
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100446404|gb|CJ970703.1|CJ970703
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162185742|gb|FC362090.1|FC362090
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100362294|gb|BY947287.1|BY947287
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100365598|gb|BY966676.1|BY966676
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162280151|gb|FC455960.1|FC455960
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100448710|gb|CJ973009.1|CJ973009
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|18369589|gb|BJ201677.1|BJ201677
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100388914|gb|BY988790.1|BY988790
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67716774|gb|BJ967034.1|BJ967034
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162177997|gb|FC354103.1|FC354103
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67569967|gb|BJ942791.1|BJ942791
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100410898|gb|BY956238.1|BY956238
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162161465|gb|FC337645.1|FC337645
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162226328|gb|FC403244.1|FC403244
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162186910|gb|FC362588.1|FC362588
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100426520|gb|BY977289.1|BY977289
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|18326015|gb|BJ158014.1|BJ158014
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162176839|gb|FC353347.1|FC353347
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162166002|gb|FC341807.1|FC341807
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100383745|gb|BY969274.1|BY969274
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100399895|gb|BY990675.1|BY990675
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100370919|gb|BY968120.1|BY968120
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67576301|gb|BJ949125.1|BJ949125
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100390771|gb|BY989254.1|BY989254
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162163473|gb|FC340007.1|FC340007
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162178215|gb|FC354933.1|FC354933
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|67703574|gb|BJ963807.1|BJ963807
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162188129|gb|FC363895.1|FC363895
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100413547|gb|BY956722.1|BY956722
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|162256719|gb|FC433237.1|FC433237
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100407013|gb|BY973966.1|BY973966
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100438447|gb|BY979961.1|BY979961
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|208357626|gb|DC914026.1|DC914026
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100418087|gb|BY993329.1|BY993329
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
EST: gi|100443404|gb|BY963700.1|BY963700
EST:     CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAG                         GTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC
genomic: CTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 106

CCCTCCCTCTCTTGCTCCGGCAAGCCTCTTGCTGGATCTCTTCCCCATGGCTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcg ... gtttctgcagGTTGCTGGATGTAATGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAACGCTGTCACATTTGGCAAGCGCTCCGATGACCTCGCCACCATTGTATCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTCCCTCTCTTGCTCCGGCAAGCCTCTTGCTGGATCTCTTCCCCATGGCTTCCACCGCGTTCGCCGCGGCCACTGCACCCAGCTCTGCCTCCCTCAAGgtaccattcgtctcctgtacttggctgcattgcgtttttgtcgatgtctgtggtcatgcatttctcctggagtacgttgatcatgtcctagtggggcgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC