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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGGTCTGTTTGCCTGTCTGCCTATCTCTCTTGGTTGCTTGTGTGCTTGTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAACgtacgttctgcgttgttcttgcctttgcattggtgggtttcttgtgtgtttgaggttatggtgttgttgttctgctgtggagtttggcggggtggggtgt...

Basic information

species Physcomitrella patens
transcript PP1S83_234V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100354261|gb|BY945788.1|BY945788
EST:     GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAAC                         CCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTTTGGACTTGT
genomic: GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAACgtacgttctg ... gatcgtgcagCCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTTTGGACTTGT
EST: gi|100377317|gb|BY968465.1|BY968465
EST:     GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAACATCGTGC                   
genomic: GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATC-AA-A-----Cgtacgttctg ... gatc
EST: gi|100377317|gb|BY968465.1|BY968465
EST:     GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAACATCGTGC                   
genomic: GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATC-AA-A-----Cgtacgttctg ... gatc
EST: gi|100377317|gb|BY968465.1|BY968465
EST:     GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATCAAACATCGTGC                   
genomic: GTGAGCGAGCTCGCTGGCTATGGCGGATTCCCAGCTTTGAGTTATC-AA-A-----Cgtacgttctg ... gatc