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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTGTACCTGCTCTGTAAGGATCGACACCGGATACATCGTGCCGTGTCTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaattaaaacagaggcatcacgtatgtacaataggatccagtgtttgcgtccaaataaggcacagaacgtgcaggttttgctggcatccgattagc...

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344845|gb|BJ176886.1|BJ176886
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTANAGTANATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18361584|gb|BJ193650.1|BJ193650
EST:     GCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: GCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18343450|gb|BJ175488.1|BJ175488
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18370295|gb|BJ201897.1|BJ201897
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|100387189|gb|BY970333.1|BY970333
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18343427|gb|BJ175465.1|BJ175465
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACCTGTACCTGCTCTGTAAGGATCGACACCGGATACATCGTGCCGTGTCTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaattaaaacagaggcatcacgtatgtacaataggatccagtgtttgcgtccaaataaggcacagaacgtgcaggttttgctggcatccgattagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaga