1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGTGGGTGTTGGTTTCAGACCGGGTGTATGGAGTAACGATGTCACGGTTCAAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttgcgatgcaatccagtctgtctagaatttctttgtcgaagttttggctatggtgccggcggtttacagtaatgcccgcagtcgtccctcgacgcaggttatttagttggtaacgtggaaatctgatttttgttatggggctgggcag
species | Physcomitrella patens |
transcript | PP1S80_41V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA AGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGANACACCACCGCGAGGEST: gi|67716209|gb|BJ966469.1|BJ966469
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA AGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGGEST: gi|208344547|gb|DC909106.1|DC909106
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA AGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGGEST: gi|100354453|gb|BY945870.1|BY945870
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA AGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGANACACCACCGCGAGGEST: gi|100451878|gb|CJ974987.1|CJ974987
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA TGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGGEST: gi|67709748|gb|BJ965564.1|BJ965564
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
EST: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAA AGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
genomic: AAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttg ... ggctgggcagAGCTGAGGGAGCAGCTGCGCATGTGAAGTTGGCTGAAACACCACCGCGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGGTGTTGGTTTCAGACCGGGTGTATGGAGTAACGATGTCACGGTTCAAATCAGCTGCTGTGTCGTTCGTGACGTTCTTCTTCCTGATTCTGTGCAAgtgagttttgcgatgcaatccagtctgtctagaatttctttgtcgaagttttggctatggtgccggcggtttacagtaatgcccgcagtcgtccctcgacgcaggttatttagttggtaacgtggaaatctgatttttgttatggggctgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT