1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGCATCTGCGCCAAAGTGGTCGTGGTGGATGCCCGCCACCATATGCTCGGCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctctattgccttttcgctctgagtttttttctcccgttgttagtgttactgtgtttctcatgtattttgaaccag
species | Physcomitrella patens |
transcript | PP1S80_110V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67576930|gb|BJ949754.1|BJ949754
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18344723|gb|BJ176764.1|BJ176764
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37830266|gb|BJ588278.1|BJ588278
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18361020|gb|BJ193084.1|BJ193084
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18350930|gb|BJ182981.1|BJ182981
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162230875|gb|FC406714.1|FC406714
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37823490|gb|BJ581556.1|BJ581556
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCNTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162269648|gb|FC444866.1|FC444866
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37821925|gb|BJ579991.1|BJ579991
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: TCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162269649|gb|FC444867.1|FC444867
genomic: TCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67709300|gb|BJ965116.1|BJ965116
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18343222|gb|BJ175260.1|BJ175260
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67719275|gb|BJ969534.1|BJ969534
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37822426|gb|BJ580492.1|BJ580492
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37838910|gb|BJ596918.1|BJ596918
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18344296|gb|BJ176336.1|BJ176336
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37822078|gb|BJ580144.1|BJ580144
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: ATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37823928|gb|BJ581994.1|BJ581994
genomic: ATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18361497|gb|BJ193563.1|BJ193563
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18373955|gb|BJ205533.1|BJ205533
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18351134|gb|BJ183185.1|BJ183185
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37824869|gb|BJ582935.1|BJ582935
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67718710|gb|BJ968969.1|BJ968969
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18372403|gb|BJ204005.1|BJ204005
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37825155|gb|BJ583221.1|BJ583221
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162268068|gb|FC443538.1|FC443538
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67574606|gb|BJ947430.1|BJ947430
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67727577|gb|BJ977836.1|BJ977836
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|67698024|gb|BJ958257.1|BJ958257
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18339094|gb|BJ171120.1|BJ171120
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|18342779|gb|BJ174815.1|BJ174815
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162230018|gb|FC405958.1|FC405958
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162230876|gb|FC406715.1|FC406715
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|37839204|gb|BJ597212.1|BJ597212
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAGEST: gi|162268067|gb|FC443537.1|FC443537
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
EST: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTC GTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
genomic: GCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctc ... tttgaaccagGTTGTCGTCCGCTCCGAGGAGATCTGCCTGTCAGGTGGTCTTGTCAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCATCTGCGCCAAAGTGGTCGTGGTGGATGCCCGCCACCATATGCTCGGCCGCTTAGCCTCAATCCTCGCCAAAGAGCTTCTCAATGGCCAGAAAGTCgtaagtcctctattgccttttcgctctgagtttttttctcccgttgttagtgttactgtgtttctcatgtattttgaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT