Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTCCTCGCAGCTTGCCGCTGCCAAGTCCCGGAATGCTAAAAACCGAACCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggttgcgaaaggatttgggttcttagtcgattgcgggggcagcttagactgttgatcattgttcagtagacgaggttgggttttagggtttag...

Basic information

species Physcomitrella patens
transcript PP1S7_369V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202963|gb|FC380348.1|FC380348
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162206138|gb|FC383131.1|FC383131
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67710007|gb|BJ965816.1|BJ965816
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162217475|gb|FC393151.1|FC393151
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|7147639|gb|AW509561.1|AW509561
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162268134|gb|FC443812.1|FC443812
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162276099|gb|FC452375.1|FC452375
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18325454|gb|BJ157451.1|BJ157451
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|19789428|gb|BQ041303.1|BQ041303
EST:     CCCTCATTTTCAAGCGTGCTCANNNNNNNCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67716289|gb|BJ966549.1|BJ966549
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162192487|gb|FC368623.1|FC368623
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162261536|gb|FC437553.1|FC437553
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67702006|gb|BJ962239.1|BJ962239
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162230958|gb|FC407213.1|FC407213
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162219897|gb|FC396712.1|FC396712
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18343052|gb|BJ175089.1|BJ175089
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67704061|gb|BJ964294.1|BJ964294
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAA                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18335238|gb|BJ167256.1|BJ167256
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162268133|gb|FC443811.1|FC443811
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTN
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67570505|gb|BJ943329.1|BJ943329
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67724079|gb|BJ974338.1|BJ974338
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162266141|gb|FC441890.1|FC441890
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162206137|gb|FC383130.1|FC383130
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67692997|gb|BJ953230.1|BJ953230
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162217474|gb|FC393150.1|FC393150
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18327318|gb|BJ159320.1|BJ159320
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162254771|gb|FC431060.1|FC431060
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162266140|gb|FC441889.1|FC441889
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67703365|gb|BJ963598.1|BJ963598
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18337941|gb|BJ169965.1|BJ169965
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67569731|gb|BJ942555.1|BJ942555
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162230957|gb|FC407212.1|FC407212
EST:     GAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: GAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|15727544|gb|BI740344.1|BI740344
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67703254|gb|BJ963487.1|BJ963487
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAGGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|7207256|gb|AW561259.1|AW561259
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67693788|gb|BJ954021.1|BJ954021
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67720498|gb|BJ970757.1|BJ970757
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18372920|gb|BJ204522.1|BJ204522
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67702376|gb|BJ962609.1|BJ962609
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|18330136|gb|BJ162142.1|BJ162142
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162261535|gb|FC437552.1|FC437552
EST:     CAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|162202964|gb|FC380349.1|FC380349
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|67704221|gb|BJ964454.1|BJ964454
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|37843436|gb|BJ601444.1|BJ601444
EST:     CAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|19787357|gb|BQ040606.1|BQ040606
EST:     CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: CCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
EST: gi|37822200|gb|BJ580266.1|BJ580266
EST:     ATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAG                         GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC
genomic: ATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 78

CAAGTCCTCGCAGCTTGCCGCTGCCAAGTCCCGGAATGCTAAAAACCGAACCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggt ... tgttgtacagGAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGTCCTCGCAGCTTGCCGCTGCCAAGTCCCGGAATGCTAAAAACCGAACCCTCATTTTCAAGCGTGCTCAGCAGTACCAGGAGGAGTATCAGAGACAGgtgaggcggttgcgaaaggatttgggttcttagtcgattgcgggggcagcttagactgttgatcattgttcagtagacgaggttgggttttagggtttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG