Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCAGGCCACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtgggatgttgttttagttggaatttttcgtttat...

Basic information

species Physcomitrella patens
transcript PP1S79_25V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os06g08340.1 (Oryza sativa), 5'ss of exon 1
ATGGGCAGGCCACA---GAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcat-gctcctgtctccgagcatacc-acagatcctt--tttctccgatgaccattgtgagaatgtggg-atgttgttttagttggaatttttcgtttat--
||||   |||| ||   | | || || || ||||| ||  | |||||||| || |||||||||||||| |||||||| || |||||| |||| |   |  ||  |   |  |   |  ||| |||  ||||| |   |   |   ||      |||  |||  | |||  ||      ||  | ||    
ATGGCGCGGCCGCAGCAGCGGTATCGCGGCGTGCGGCAGCGCCACTGGGGCTCATGGGTCTCCGAGATCCGCCACCCTCTCCTgtaattcatcgtcgccatcctcctcctgattgattgattctttgtttcttcctcgcgtagattggtttcttggccatggcggtttgatttcttggttgggcttgcag

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA14G13470.1 (Glycine max), 5'ss of exon 1
ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtgggatgttgttttagttggaatttttcgtttat----
|||| ||| ||   |||| | |||||||| || || |||||||| ||||| || ||||||||||| |||||||||||  |  |||||||  | |  ||  |    |   |  ||||   ||| ||      || | |    |     |     |     | ||||| | |  |  | |   ||    
ATGGCCAGACCTCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTATATTgtaagtttttccactcccatgcaagttttcaca---cctcttcaaaaaattaaccacattcatttccaaaaaaaaatgttagt-gtatgtccttgcaaattgta

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA08G23160.1 (Glycine max), 5'ss of exon 1
-----------------ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccg-------agcataccaca-------gatcctttttctccgatgaccattgtgagaatgtgggatgttgt---tttagttggaatttttcgtttat-----------------------------------------------------------------------
                 |||| ||| ||   |||  | || || || || ||||||||||||||||| || |||||||| || |||||||||||  |  ||||| |||   |||               | || ||||||       || ||||||| |||      | || | | |       |||||        | | |  || | | |                                                                            
TCTTTTTTCTCATCATCATGGCCAGACCCCAACAACGCTATCGTGGAGTACGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTGTTgtaattcactttccctcactaacaaagtcatcacaccacactaacttgaccctttttttccccc--tctttattaaagacaataatgtttccaacacaatcgatatgtcttgaaagcaatttactacattactactaagtaattgatatggttattgcactcttgttttgtttttttttggaccacag

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA07G02930.1 (Glycine max), 5'ss of exon 1
-----------------ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtca--tgctcctgtctccgagcataccacag-atcctttttctccgatgaccattgtgagaatgtgggatgttg--ttttagttggaatttttcgtttat
                 |||| ||| ||   |||  | || || || || ||||||||||||||||| || |||||||| || |||||||||||  |  ||||| |||  | | |       | | |  | ||||  |   |   |   |  |   | || |    ||    ||   |   |||   |   |||| | |      
TTTTTTTCCTCATCATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcactttccctcactaacaaactgatcacaccacattcacttgacctttttctttttctttattaaagacaataaatttccatcacaattctccc-----

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA17G33060.1 (Glycine max), 5'ss of exon 1
ATGGGCAGGCCAC---AGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttt----tctccgatgaccattgtgagaatgtgggatgttgttttagttggaatttttcgtttat
|||| ||| ||||   || | |||||||| || || |||||||| ||||| || ||||||||||| |||||||||||  |  |||||||  | |  ||  |    |   |  ||||  || |       |   | |    ||||   ||||      ||  ||||   ||      ||         
ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTgtaagtttttccactcccatgcaagttttcacacctcttcaaaaaattaaccacattcatttccagaaaaaaaaataatgttagtgtatatgcttgcaaa----

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA06G06780.1 (Glycine max), 5'ss of exon 1
-----------------ATGGGCAGGCCACA---GAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtg----ggatgttgttttagttggaatttttcgtttat
                 |||| |||  ||||   | |||||||||| || || |||||||| ||||| || ||||||||||| ||||| |||||  |  |||||||    ||  ||  | |      |   || ||     || ||    ||| |   | |  ||  |      |||||| |  ||    ||   |  ||    
CGTTTCTTTTCCCTACCATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTgtaagtgccccttttggtttcacttccatt-cacatttcacttatctttagactaaaataaacatcagtaacaaatgttggtcaagcaaaaaaaataagtc---

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA04G06690.1 (Glycine max), 5'ss of exon 1
-----------------ATGGGCAGGCCACA---GAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtgggatgttgttttagttggaatttttcgtttat---
                 |||| |||  ||||   | |||||||||| || || |||||||| ||||| || ||||||||||| ||||| |||||  |  |||||||    ||  ||| | |   |  |   || ||     || ||    ||| |     |  |      |||||| | |||    |    || ||  ||   
CGTTTCTTTTCCCTAACATGGCCAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTgtaagtgccccttttgttttcactc-caatgcacatttcacttatctatggacta--aaaaatagaccaaatgttggtctagcaaaagaaattagtccatggc

upper sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA15G00660.1 (Glycine max), 5'ss of exon 2
-----------------ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtcatgctcctgtctccgagcataccacagatcctttttctccgatgaccattgtgagaatgtgggatgttgttttagttggaat--ttttcgtttat--
                 ||||  || ||   |||  | || ||||| || ||||| ||||||||||| || |||||||| || ||||||||||| ||| ||||| || |  |  |   |   | | | |  || |     || || | ||     |||  | | |     |  ||||| | ||| |  |  | || ||| |   
TCTTCATCAATATCATCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTgtaa-tcttctttttaatt--aaaccttct-caaagtaaattgctac-attcttgttgc-atactaattaacattgttgttgtttgtttggtgtttgttcacag