Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGATGTCCCCTCTTGTGTCCGACCTTCGCCTGTACGATATTGCAAATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactatttctcaactggatttaacccttgaatccaatcgaagatcggaaggctgcggattgtgatgtaacctgtgaaaaaatgtgacttattctattgggatggttctttgatcctccaaatattgaggaagttgacggcgagtctgtttactctttcag

Basic information

species Physcomitrella patens
transcript PP1S79_110V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67709714|gb|BJ965530.1|BJ965530
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67718039|gb|BJ968298.1|BJ968298
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|208360119|gb|DC939158.1|DC939158
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162170324|gb|FC346521.1|FC346521
EST:     TTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: TTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|208400655|gb|DC908966.1|DC908966
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100390851|gb|BY989334.1|BY989334
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100373949|gb|BY967871.1|BY967871
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162150498|gb|FC326146.1|FC326146
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100392723|gb|BY971852.1|BY971852
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100387527|gb|BY988398.1|BY988398
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67719457|gb|BJ969716.1|BJ969716
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18368240|gb|BJ200325.1|BJ200325
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162268356|gb|FC444125.1|FC444125
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67717368|gb|BJ967627.1|BJ967627
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGA
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGA
EST: gi|100400057|gb|BY990757.1|BY990757
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162153053|gb|FC330083.1|FC330083
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|208394219|gb|DC933887.1|DC933887
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18363106|gb|BJ195178.1|BJ195178
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162195925|gb|FC375658.1|FC375658
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100433683|gb|BY960654.1|BY960654
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|208390508|gb|DC933765.1|DC933765
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100448425|gb|CJ972724.1|CJ972724
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100440843|gb|BY962331.1|BY962331
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|208370698|gb|DC936158.1|DC936158
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67718902|gb|BJ969161.1|BJ969161
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18373160|gb|BJ204762.1|BJ204762
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGT
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGT
EST: gi|100384137|gb|BY950523.1|BY950523
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18374877|gb|BJ206455.1|BJ206455
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACT
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACT
EST: gi|67508508|gb|BJ941373.1|BJ941373
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100410309|gb|BY992042.1|BY992042
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67712620|gb|BJ966069.1|BJ966069
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|67717617|gb|BJ967876.1|BJ967876
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100405442|gb|BY955527.1|BY955527
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACCGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18371317|gb|BJ202919.1|BJ202919
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100405651|gb|BY973784.1|BY973784
EST:     TGTTAAGGGGAGT-GCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAA                         GTCTCTGCCTACACTGGTCCAGCAGAACTCG
genomic: TGTTAAGGG-AGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCG
EST: gi|208358903|gb|DC942985.1|DC942985
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|18360056|gb|BJ192117.1|BJ192117
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100406294|gb|BY955560.1|BY955560
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100413245|gb|BY956578.1|BY956578
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|100434097|gb|BY978957.1|BY978957
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAAGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
EST: gi|162162851|gb|FC338100.1|FC338100
EST:     ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAG                         GTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG
genomic: ATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 27 (upstream exon), 35 (downstream exon)
Score: 20

GATCAAGATGTCCCCTCTTGTGTCCGACCTTCGCCTGTACGATATTGCAAATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactattt ... actctttcagGTCTCTGCCTACACTGGTCCAGCAGAACTCGCAGCAGCACTGAAGGACGTGAACCTCGTTATCATTCCCGCAGGAGTACCCCGCAAACCCGGCATGACCA




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCAAGATGTCCCCTCTTGTGTCCGACCTTCGCCTGTACGATATTGCAAATGTTAAGGGAGTTGCTGCGGATCTTAGTCATTGCAACACTCCTGCGCAGgtaactatttctcaactggatttaacccttgaatccaatcgaagatcggaaggctgcggattgtgatgtaacctgtgaaaaaatgtgacttattctattgggatggttctttgatcctccaaatattgaggaagttgacggcgagtctgtttactctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC