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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATATCGCTATCGTGTGCTAGCTGTAGCAGCGGCGTTGCGAGCTTCTGTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCCgtaagccagtcttttgacgatttctctctctcgctcgctctctctcatgtagatttgttttctgatatatatatatatatatatatatatatatatcttg...

Basic information

species Physcomitrella patens
transcript PP1S78_54V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386212|gb|BY987879.1|BY987879
EST:     GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTTC                         ACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG
genomic: GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCCgtaagccagt ... gcttttgcagACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG
EST: gi|100389861|gb|BY971213.1|BY971213
EST:     GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCC                         ACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG
genomic: GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCCgtaagccagt ... gcttttgcagACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG
EST: gi|100391173|gb|BY971523.1|BY971523
EST:     GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCC                         ACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG
genomic: GTAGGGGTTCCAGGACCCGTACACGATGAACGCGGGACCTTCAGGATTCCgtaagccagt ... gcttttgcagACAATGCCCCTGTGACCAAGGCAATAGTGATGGCGTGTGGTCTGGCTTCGG