1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAGTGGACAAGATGATTGCTGAGGAGATGCGGCTGAGCTCCAAAAAGCCTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgacctgcagtgtccataattgtctgtatattccgaaatgccgacattcggcgagcatggaacattagcagagctgttggattacttgggagaa...
species | Physcomitrella patens |
transcript | PP1S78_33V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|18342415|gb|BJ174450.1|BJ174450
genomic: TCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGEST: gi|162240059|gb|FC418823.1|FC418823
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAG
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|162240058|gb|FC418822.1|FC418822
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|208380076|gb|DC914626.1|DC914626
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|37821556|gb|BJ579622.1|BJ579622
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|208381716|gb|DC928379.1|DC928379
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|162256324|gb|FC432334.1|FC432334
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|18334929|gb|BJ166947.1|BJ166947
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|162256323|gb|FC432333.1|FC432333
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCCEST: gi|18326958|gb|BJ158959.1|BJ158959
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACCGAGTGCGAGCTGGAAAAGCC
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGEST: gi|18326773|gb|BJ158773.1|BJ158773
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAG
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGEST: gi|18326826|gb|BJ158826.1|BJ158826
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAG
EST: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAG GACCATCCAATGCTTGCAAAAGAGTTTGACCCGAGTGCGAGCTGGAAAAGC
genomic: CTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgac ... catggaccagGACCATCCAATGCTTGCAAAAGAGTTTGACC-GAGTGCGAGCTGGAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGTGGACAAGATGATTGCTGAGGAGATGCGGCTGAGCTCCAAAAAGCCTTCTGACTTCCTCGCCGAGCTGCCTCCCGTGCCTTCCATCAATGCTCAGgtatggtgacctgcagtgtccataattgtctgtatattccgaaatgccgacattcggcgagcatggaacattagcagagctgttggattacttgggagaa
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