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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCTCTGTTGCTTCGGCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAgtaagccccaattatcctccataacatcccctgccttgttgttcctgccttgttgttgatattcccctcagtgttaagcatgggagtagaatgcgtgtcc...

Basic information

species Physcomitrella patens
transcript PP1S78_28V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344658|gb|BJ176699.1|BJ176699
EST:     GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAGAAA                      
genomic: GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGC----AAgtaagcccca ... tgcagga
EST: gi|18344658|gb|BJ176699.1|BJ176699
EST:     GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAGAAA                      
genomic: GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGC----AAgtaagcccca ... tgcagga
EST: gi|100422315|gb|BY976314.1|BY976314
EST:     AACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAGAAA                      
genomic: AACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGC----AAgtaagcccca ... tgcagga
EST: gi|100422315|gb|BY976314.1|BY976314
EST:     AACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAGAAA                      
genomic: AACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGC----AAgtaagcccca ... tgcagga
EST: gi|100363006|gb|BY984310.1|BY984310
EST:     GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAA                         GTTGTCGAGTAACAGTGAAGTTCGTCGATGTTAAGGTCTTCATTGTGAGAA
genomic: GCAACACAATTTTCTCTCTCTCGGCATCCGAGGTCCCTCGCCCTGCGCAAgtaagcccca ... tgcaggaaagGTTGTCGAGTAACAGTGAAGTTCGTCGATGTTAAGGTCTTCATTGTGAGAA