Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTCGTTTGTCACTTGGATCTTTGTGTTTCGGGGTCTTCCGCTGTCTGTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttcttgacattccatgaaagatttcaacgtgggctttgagtttcaccgtaattttgaagatgtcgaagtgtttgatgggtgttggatctctcttg...

Basic information

species Physcomitrella patens
transcript PP1S78_27V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100360331|gb|BY966118.1|BY966118
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18350017|gb|BJ182068.1|BJ182068
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208397353|gb|DC908243.1|DC908243
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|67717573|gb|BJ967832.1|BJ967832
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|162272037|gb|FC448455.1|FC448455
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100402336|gb|BY954785.1|BY954785
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100444931|gb|BY982759.1|BY982759
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100446423|gb|CJ970722.1|CJ970722
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100361733|gb|BY947795.1|BY947795
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100379442|gb|BY986639.1|BY986639
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208376014|gb|DC914439.1|DC914439
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100391313|gb|BY971594.1|BY971594
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100437098|gb|BY961350.1|BY961350
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100441789|gb|BY962880.1|BY962880
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100369212|gb|BY985066.1|BY985066
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100442833|gb|BY963328.1|BY963328
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100359355|gb|BY965706.1|BY965706
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18366021|gb|BJ198099.1|BJ198099
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100441712|gb|BY962803.1|BY962803
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100407309|gb|BY991637.1|BY991637
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100376555|gb|BY986223.1|BY986223
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100452966|gb|CJ975533.1|CJ975533
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100422743|gb|BY957978.1|BY957978
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208350182|gb|DC901580.1|DC901580
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100425877|gb|BY977165.1|BY977165
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100405783|gb|BY973852.1|BY973852
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100444653|gb|BY982482.1|BY982482
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|67571113|gb|BJ943937.1|BJ943937
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18374458|gb|BJ206036.1|BJ206036
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100422244|gb|BY957928.1|BY957928
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100355782|gb|BY965143.1|BY965143
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208379712|gb|DC907597.1|DC907597
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208352107|gb|DC901670.1|DC901670
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100353968|gb|BY983401.1|BY983401
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100386162|gb|BY970101.1|BY970101
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100392749|gb|BY971865.1|BY971865
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100363375|gb|BY966370.1|BY966370
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208357881|gb|DC902363.1|DC902363
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100391221|gb|BY971548.1|BY971548
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100450398|gb|CJ974243.1|CJ974243
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100393931|gb|BY953554.1|BY953554
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|67575957|gb|BJ948781.1|BJ948781
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18360903|gb|BJ192967.1|BJ192967
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18351478|gb|BJ183530.1|BJ183530
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208393630|gb|DC904346.1|DC904346
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100388982|gb|BY952186.1|BY952186
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18325904|gb|BJ157902.1|BJ157902
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100366755|gb|BY985262.1|BY985262
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100377777|gb|BY986391.1|BY986391
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100353389|gb|BY964782.1|BY964782
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100385932|gb|BY951126.1|BY951126
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100429589|gb|BY959638.1|BY959638
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100443192|gb|BY981818.1|BY981818
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100449231|gb|CJ973530.1|CJ973530
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208358367|gb|DC930724.1|DC930724
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208377233|gb|DC932383.1|DC932383
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100362157|gb|BY947218.1|BY947218
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100360392|gb|BY984104.1|BY984104
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100429873|gb|BY978131.1|BY978131
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100373620|gb|BY967749.1|BY967749
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208378755|gb|DC914729.1|DC914729
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100395992|gb|BY972229.1|BY972229
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18330235|gb|BJ162241.1|BJ162241
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTT
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTT
EST: gi|100359043|gb|BY965650.1|BY965650
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100365156|gb|BY966838.1|BY966838
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100389420|gb|BY988898.1|BY988898
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCCCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100424907|gb|BY976876.1|BY976876
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208367195|gb|DC935981.1|DC935981
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100443786|gb|BY963883.1|BY963883
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCAAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18346875|gb|BJ178920.1|BJ178920
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100423255|gb|BY958209.1|BY958209
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|208394206|gb|DC933874.1|DC933874
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100444835|gb|BY982663.1|BY982663
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|18348847|gb|BJ180896.1|BJ180896
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100365332|gb|BY966926.1|BY966926
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|162242693|gb|FC416384.1|FC416384
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
EST: gi|100417198|gb|BY957216.1|BY957216
EST:     GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC                         GTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... ttattgtcagGTTTTGTTTTTGGTATCAGGTGGGCTCAACTTAGTGATTAGCCGAGCATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTTTCGTTTGTCACTTGGATCTTTGTGTTTCGGGGTCTTCCGCTGTCTGTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttcttgacattccatgaaagatttcaacgtgggctttgagtttcaccgtaattttgaagatgtcgaagtgtttgatgggtgttggatctctcttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA