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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCCAGCTCCTCCAAGGGTTCCCCTTGTCATAGCATCTTCATCGTCTGATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaatcatcactcctttttgtttctccctctcatctcgatccgattggtagctgttgatgagagccgttcctgagagttgtgatacgattgtgag...

Basic information

species Physcomitrella patens
transcript PP1S78_207V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352214|gb|DC901721.1|DC901721
EST:     GATTCCACCCATCTATCGTACCACCCACCGCTCCTACGTCCTCCCGCAAG                         ACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
genomic: GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaat ... tctatggcagACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
EST: gi|100443900|gb|BY982128.1|BY982128
EST:     GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAG                         ACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
genomic: GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaat ... tctatggcagACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
EST: gi|100426742|gb|BY977339.1|BY977339
EST:     ATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAG                         ACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
genomic: ATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaat ... tctatggcagACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
EST: gi|208348267|gb|DC905509.1|DC905509
EST:     GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAG                         ACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
genomic: GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaat ... tctatggcagACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
EST: gi|162246590|gb|FC422492.1|FC422492
EST:     GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAG                         ACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT
genomic: GATTCCACCCATCTATCGTACCACCCATCGCTCCTACGTCCTCCCGCAAGgtgtgagaat ... tctatggcagACTATCAGCCTCACTCCTCGTTGGCCATGAGGAGACCGCAGAGGCCATATT