1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCATATTTGTGTCCAGGCTGTTGGCGACGTTGTTTGGAGATAAGGAAGCGCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTTgtatccatttttaaaccggactgttctcgaggttttgctgcttagggtaatcgcggcattgtgacactatttacaaacctagcatctggttctaggtcga...
species | Physcomitrella patens |
transcript | PP1S78_17V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTT ATCGATTGCAAGTCGGAGAGGTCGTCTCAACCATTCCTAEST: gi|162248508|gb|FC423737.1|FC423737
genomic: GCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTTgtatccattt ... ctctgaacagATCGATTGCAAGTCGGAGAGGTCGTCTCAACCATTCCTA
EST: GCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTT ATCGA-TGNCAAGTCGGAGAGGTCGTCTCAACCATTCCTA
genomic: GCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTTgtatccattt ... ctctgaacagATCGATTG-CAAGTCGGAGAGGTCGTCTCAACCATTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATATTTGTGTCCAGGCTGTTGGCGACGTTGTTTGGAGATAAGGAAGCGCGTATTCTTGTCCTTGGTTTGGACAACGCCGGGAAGACGACCATCCTTTgtatccatttttaaaccggactgttctcgaggttttgctgcttagggtaatcgcggcattgtgacactatttacaaacctagcatctggttctaggtcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA