1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCAACATTGGCAGATCCAGTGCAATCGCCTGTAACTTAGAAATTGAACACAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatattccgcttctgtgaattggaatttcaggattaggattagattgtgtttcgaaaattgggagtgttgcactgaatgagcacttgtaacatgg...
species | Physcomitrella patens |
transcript | PP1S76_162V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACGTTTGCGCTGCACATCCTTCAGGCAGAEST: gi|100445252|gb|BY982881.1|BY982881
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|18372205|gb|BJ203807.1|BJ203807
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|18365810|gb|BJ197888.1|BJ197888
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|100429999|gb|BY978196.1|BY978196
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|208360547|gb|DC930847.1|DC930847
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: GGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|100451064|gb|CJ974579.1|CJ974579
genomic: GGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|18367612|gb|BJ199695.1|BJ199695
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|100428777|gb|BY959428.1|BY959428
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGN NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGAEST: gi|208364204|gb|DC943432.1|DC943432
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
EST: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGT NNNNNNNTTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
genomic: CAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatat ... atatgtgcagAAAAAAATTCACGTTTTCATTGACATTTGCGCTGCACATCCTTCAGGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAACATTGGCAGATCCAGTGCAATCGCCTGTAACTTAGAAATTGAACACAGATCTACTTCAGGATCGGTTTCAAGTGCCCACCGACTCCTGTGGAAGTgtaagcatattccgcttctgtgaattggaatttcaggattaggattagattgtgtttcgaaaattgggagtgttgcactgaatgagcacttgtaacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG