1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTGCAAATATGCTCTTTGCTGAAGAACTCGCCGGCCATGAGCTGCAGGGAGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatatataatccctctcccccttccccacacgtatcctgaatcttgacattttgtccaaccctgtcttagtgaagaggaatcggactatctacta...
species | Physcomitrella patens |
transcript | PP1S76_15V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCG GTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTGEST: gi|208345476|gb|DC913023.1|DC913023
genomic: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatat ... catggagcagGTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTG
EST: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCG GTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTGEST: gi|100425260|gb|BY977053.1|BY977053
genomic: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatat ... catggagcagGTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTG
EST: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCG GTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTGEST: gi|67716737|gb|BJ966997.1|BJ966997
genomic: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatat ... catggagcagGTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTG
EST: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCG GTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTGEST: gi|100382353|gb|BY969089.1|BY969089
genomic: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatat ... catggagcagGTACGTGCAGGTTTGGAGATGGCAATTTTCGATGCTTTAGCACACAGCGTG
EST: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACGTCGCCTCG GTACGTGCAGGTTTGGAGATGGCAAATTTTCGATGCTTTAGCACACAGCGT
genomic: AGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatat ... catggagcagGTACGTGCAGGTTTGGAGATGGCAA-TTTTCGATGCTTTAGCACACAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCAAATATGCTCTTTGCTGAAGAACTCGCCGGCCATGAGCTGCAGGGAGGTGCTGGAGAATGTTGCCCACTTGCTCCCTGGCCATGACTTCGCCTCGgtaagaatatataatccctctcccccttccccacacgtatcctgaatcttgacattttgtccaaccctgtcttagtgaagaggaatcggactatctacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA