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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGGCGCCCAGGATCGTTATGAGGCGGCGAAGAACACTGCTTCTCAGAAGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacctcaatttgggttttcatctttccgcaatttgaagtcttcttttatggcttctcacgcggcttttcaagtttgtattgcatgtcgaagtcgt...

Basic information

species Physcomitrella patens
transcript PP1S75_99V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100399806|gb|BY972902.1|BY972902
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100399518|gb|BY972759.1|BY972759
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|67573444|gb|BJ946268.1|BJ946268
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|162257794|gb|FC433992.1|FC433992
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100368910|gb|BY984938.1|BY984938
EST:     AGGCAGACGAGACCGCCTATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCATGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|18330126|gb|BJ162132.1|BJ162132
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100398256|gb|BY954167.1|BY954167
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100372642|gb|BY948633.1|BY948633
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|162274518|gb|FC450961.1|FC450961
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|162256247|gb|FC432303.1|FC432303
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100352413|gb|BY983196.1|BY983196
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100448152|gb|CJ972451.1|CJ972451
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|162255767|gb|FC431427.1|FC431427
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: gi|100387993|gb|BY988466.1|BY988466
EST:     AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG                         GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGGCGCCCAGGATCGTTATGAGGCGGCGAAGAACACTGCTTCTCAGAAGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacctcaatttgggttttcatctttccgcaatttgaagtcttcttttatggcttctcacgcggcttttcaagtttgtattgcatgtcgaagtcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC