1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGGGGCGCCCAGGATCGTTATGAGGCGGCGAAGAACACTGCTTCTCAGAAGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacctcaatttgggttttcatctttccgcaatttgaagtcttcttttatggcttctcacgcggcttttcaagtttgtattgcatgtcgaagtcgt...
species | Physcomitrella patens |
transcript | PP1S75_99V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100399518|gb|BY972759.1|BY972759
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|67573444|gb|BJ946268.1|BJ946268
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|162257794|gb|FC433992.1|FC433992
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100368910|gb|BY984938.1|BY984938
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCTATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCATGCAGCCTTGGACAAACTGCAACAGATGEST: gi|18330126|gb|BJ162132.1|BJ162132
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100398256|gb|BY954167.1|BY954167
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100372642|gb|BY948633.1|BY948633
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|162274518|gb|FC450961.1|FC450961
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|162256247|gb|FC432303.1|FC432303
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100352413|gb|BY983196.1|BY983196
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100448152|gb|CJ972451.1|CJ972451
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|162255767|gb|FC431427.1|FC431427
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATGEST: gi|100387993|gb|BY988466.1|BY988466
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
EST: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCG GAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
genomic: AGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacct ... catcacacagGAAACCCTTTCTCAGTACACCCAGGCAGCCTTGGACAAACTGCAACAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGGCGCCCAGGATCGTTATGAGGCGGCGAAGAACACTGCTTCTCAGAAGGCAGACGAGACCGCCAATGTTGCTGGTCAGAAGAAGAACACGGTTGCGgtaggtacctcaatttgggttttcatctttccgcaatttgaagtcttcttttatggcttctcacgcggcttttcaagtttgtattgcatgtcgaagtcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC