1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATACGGTCCTCCGCATCGCACTGATAATCCGGTCCGGTATTACCAAGTTCTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatgcggccttctcatggacatccgtcaccaagtttgaggacgatccttcattttttgcgtttttttcttctgactgacgtcgtagcttccgta...
species | Physcomitrella patens |
transcript | PP1S75_75V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100405645|gb|BY973781.1|BY973781
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCAGGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTCCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100391857|gb|BY989582.1|BY989582
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100368601|gb|BY967087.1|BY967087
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGTTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100384956|gb|BY969691.1|BY969691
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100351968|gb|BY964638.1|BY964638
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100411132|gb|BY956337.1|BY956337
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100354570|gb|BY983455.1|BY983455
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100391464|gb|BY971670.1|BY971670
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|208363881|gb|DC943338.1|DC943338
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100441883|gb|BY981106.1|BY981106
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100395894|gb|BY972180.1|BY972180
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGGEST: gi|100353584|gb|BY964880.1|BY964880
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
EST: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCG GAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
genomic: CTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatg ... tcaattgcagGAATTTGCTGACATTTCTATCAGTGCTGGGACTCAATCAAGTGGTCATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATACGGTCCTCCGCATCGCACTGATAATCCGGTCCGGTATTACCAAGTTCTCGTGGTGCATGCTCCAACGGCGTCACTGCTCGCCAAGGAATGAGCTCGgtgagtaatgcggccttctcatggacatccgtcaccaagtttgaggacgatccttcattttttgcgtttttttcttctgactgacgtcgtagcttccgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA