1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTCCCAACAAAAGCAGGTTCTAGCGGCGTGGAGTCGTTACCTAAAGAGATGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattcacttgtgatttgagtgaatgcagtcaccgatgaccaaagataaatggtcgacgccttctctagacatgatattatgcattgattgattttttattcatcttttagtggcaggcagtggagctgaataacataatattttggtcctggcatgcag
species | Physcomitrella patens |
transcript | PP1S74_168V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGACGATAAG GAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATCEST: gi|208393031|gb|DC929526.1|DC929526
genomic: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattc ... tggcatgcagGAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATC
EST: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAG GAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATCEST: gi|162280067|gb|FC456461.1|FC456461
genomic: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattc ... tggcatgcagGAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATC
EST: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAG GAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATCEST: gi|162171285|gb|FC347223.1|FC347223
genomic: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattc ... tggcatgcagGAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATC
EST: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAG GAGATCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATC
genomic: TGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattc ... tggcatgcagGAGTTCGAGGCAACAGTAGTGGATGGAAATGGCACTGAGACGGGCCACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCCCAACAAAAGCAGGTTCTAGCGGCGTGGAGTCGTTACCTAAAGAGATGCACGGGATGAAGCTAAGAGATGACAAGGTTGACCACAGCGATGATAAGgtcagtattcacttgtgatttgagtgaatgcagtcaccgatgaccaaagataaatggtcgacgccttctctagacatgatattatgcattgattgattttttattcatcttttagtggcaggcagtggagctgaataacataatattttggtcctggcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG