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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttcctctccctcgtttctcttcacttctttggtttccgtgctcgtgtgttgagtgtgtgtgtgagctagtctttttttttttttcggttgtgc...

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_140V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 1
-GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttcctctccctcgtttctcttcacttctttggtttccgtgctcgtgtgttgagtgtgtgtgtgagctagtctttttttttttttcggttgtgc-
 ||      |     | ||||||||||||||| |||||  |||| ||||| |||||||| ||||||||||||  ||| ||||||||||| ||||||   |||||   |  |      ||| |    || |       || | | |  |||  |   ||   | | | ||     | || ||   ||  |||      |    
AGCGGAGAGTAGAGGG-AATGGCGTCCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGACGCCTTCCTCACCAAgtacgcgcgcgctcgtctcctcctgctccttagtcctgatctac-cgctgatcccttttttttttttgccttttcgttttgcgttcgtttggatccgaatg

upper sequence: PP1S74_140V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 5'ss of exon 1
-GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttcctctccctcgtttctcttcacttctt----tggtttccgtgctcgtgtgttgagtgtgtgt-gtgagctagtctttttttttttttcggttgtgc
 |       |     ||    || | |||||| || ||  ||||||||||||||||||| ||||||||||||  ||| |||||||| || |||||||  |||||      || | ||  |    ||||||   |  |    || | ||     |      |   || | ||| ||  |  || || |  | || |  |  ||    
AGGGAAGGATGGAGAGCGGAAGC-TACGAGGGCGTCCTCCTGGGCATGGGAAACCCCCTCCTCGACATCTCCGCCGTCGTCGACGAGGCCTTCCTCGCAAAgtatgaa--ccaccccaacagccctcttcgtgtgctgtaatgatctctcgattaaaacctatggtctctgtagtctgtaagactgtactcttctgccaattt---

upper sequence: PP1S74_140V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 1
GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttcctctccctcgtttctcttcacttctttggtttccgtgctcgtgtgttgagtgtgtgt-gtgagctagtctttttttttttttcggttgtgc
| |                |||| ||||||| |||||  |||| ||||| |||||||| ||||||||||||  ||| ||||| ||||| |||||    ||||||  | || |  ||      |||| |  ||  | || ||   |   | | ||      |    || |||   | ||   |||   |  ||  | | || 
GGAGAAGAGAGGAAATGGCGGCGACCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTCGTCGATGACGCCTTCCTGACAAAgtaagcggtcgtaccctcgccctctcgtgtctgatctgtttataggaattgagttactcctagtcgtagtgttttggttgctttcggtggttttgctatg-

upper sequence: PP1S74_140V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G135132_T01 (Zea mays), 5'ss of exon 1
GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttcctctccctcgtttctcttcacttctttggtttccgtgctcgtgtgttgagtgtgtgtgtgagctagtctttttttttttttcggttgtgc-
  |                ||||  |||||| |||||  |||| ||||| |||||||| ||||||||||||  ||| ||||| ||||| ||||| |  |||||| |       || |||   |||||     |  |  ||||    |      |  |    ||    ||  | | |  ||      |||| |||    |  
AGAGAAGAGAGGAAATGGCGGCGAGCGAGGGCGTGCTCCTGGGGATGGGCAACCCCCTCCTCGACATCTCCGCCGTTGTCGATGACGCCTTCCTGGCAAAgtaa-gtcggtcgtctctcacctctctcactctgatctgtttataggaattactcctagtcgtagtggtctggttgctttcggcggttttgcggcctagtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162985|gb|FC338167.1|FC338167
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18330051|gb|BJ162057.1|BJ162057
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67704109|gb|BJ964342.1|BJ964342
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18363954|gb|BJ196027.1|BJ196027
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18361231|gb|BJ193296.1|BJ193296
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18373465|gb|BJ205043.1|BJ205043
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCNTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67703978|gb|BJ964211.1|BJ964211
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18361452|gb|BJ193518.1|BJ193518
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18363048|gb|BJ195120.1|BJ195120
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67702174|gb|BJ962407.1|BJ962407
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|18373978|gb|BJ205556.1|BJ205556
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100366155|gb|BY967307.1|BY967307
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|67702385|gb|BJ962618.1|BJ962618
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAA                         GTACGGGCTGACGCTAAACAACGCCATTCTTGCTGAGGACAAGCACCTTCC
genomic: AACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 34 (downstream exon)
Score: 13

GCATTCTCTCTCTCGCAATGGCGTCCGAGGGTGTGCTTTTGGGCATGGGAAACCCCCTGCTCGACATCTCCTGCGTGGTCGACGACGCATTCCTCGAGAAgtaacggttc ... tgatgtacagGTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT




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