1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCGCCAAAGCCAAATCTGCTTCCCGTTGTTACCATTTTTTCTTAGTCTCGTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgccgttccgtctcaaggttttccttggagttttcgaaactttaattacgtttcttttttcttttttcttcacaacagatgtgctgtgtacac...
species | Physcomitrella patens |
transcript | PP1S73_94V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCEST: gi|18352162|gb|BJ184216.1|BJ184216
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCEST: gi|18359587|gb|BJ191648.1|BJ191648
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCEST: gi|18342920|gb|BJ174956.1|BJ174956
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCEST: gi|67703887|gb|BJ964120.1|BJ964120
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCEST: gi|18348107|gb|BJ180154.1|BJ180154
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCCAAAGCCAAATCTGCTTCCCGTTGTTACCATTTTTTCTTAGTCTCGTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgccgttccgtctcaaggttttccttggagttttcgaaactttaattacgtttcttttttcttttttcttcacaacagatgtgctgtgtacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT