1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTCTAAGCTACGTTGCATTTCGAAGCTGCAGCCGATTCCTCCTCCGGACTTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtcttcctttatcttgcatgcttttaggttccctccttgttttagggtttttgcttaggcgggaattcattctctgtttcgtcgtgattagta...
species | Physcomitrella patens |
transcript | PP1S726_1V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGGEST: gi|19786461|gb|BQ040480.1|BQ040480
genomic: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtc ... gtgggcgtagATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
EST: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAG ATTTTTGATGAAACTGAACAATGAGACGGGATCAATAGAACTCAAGAATGGEST: gi|18327020|gb|BJ159021.1|BJ159021
genomic: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtc ... gtgggcgtagATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
EST: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGGEST: gi|19777854|gb|BQ039234.1|BQ039234
genomic: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtc ... gtgggcgtagATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
EST: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGGEST: gi|67575738|gb|BJ948562.1|BJ948562
genomic: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtc ... gtgggcgtagATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
EST: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
genomic: TTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtc ... gtgggcgtagATTTTTGATGAAACTGAACAATGAGACGGTATCAATAGAACTCAAGAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTAAGCTACGTTGCATTTCGAAGCTGCAGCCGATTCCTCCTCCGGACTTTGTTTGAGAAGATTCGACAAATTGGGGAGTCACCATGAAGCTTGTCAGgtgcggggtcttcctttatcttgcatgcttttaggttccctccttgttttagggtttttgcttaggcgggaattcattctctgtttcgtcgtgattagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC