Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67571814|gb|BJ944638.1|BJ944638EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|208390821|gb|DC938400.1|DC938400EST: TCCTCGCTTGCTGGACGTGGNTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|18372013|gb|BJ203615.1|BJ203615EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|162239548|gb|FC414061.1|FC414061EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|18343913|gb|BJ175951.1|BJ175951EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|100387197|gb|BY970341.1|BY970341EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|208366961|gb|DC951448.1|DC951448EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
EST:
gi|67578171|gb|BJ950338.1|BJ950338EST: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAG GGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
genomic: TCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcg ... gtgtgggcagGGAAACAATGCTTGGCAGGCAGGGACTGAGGTCTGGTCTGAGGACATGGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGCATTGTCGACTTAGAGTGAGTGTTCCTTCACATCCAGCACGAAGAAGTCCTCGCTTGCTGGACGTGGTTTAGTGCCCCAGTGCACGCGATTCCGAAGgtttctggcggtgtttcccttgttggatcccttatttggttgaatttgagcgaagcgtgtgatggatgtcgtaattctgtgtgttttgggtgtggagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA