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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATGAGGAGTGCCGTACAAAGCTTGGTCAGAGTGAAGAAGCTCTGCCGCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcctgttttctttgaagtcaagtgtgagtgcacgatggagatgttatttgtttgttctctacgagttcgatgtaggacagaggaatcgtttccc...

Basic information

species Physcomitrella patens
transcript PP1S6_302V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388113|gb|DC941724.1|DC941724
EST:     GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|100444725|gb|BY982554.1|BY982554
EST:     ATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: ATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|208380026|gb|DC914576.1|DC914576
EST:     GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|100386275|gb|BY987942.1|BY987942
EST:     GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|100426269|gb|BY958812.1|BY958812
EST:     GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|100434101|gb|BY978959.1|BY978959
EST:     GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: GCTCTCCTAACAATCATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
EST: gi|100417753|gb|BY975636.1|BY975636
EST:     ATCGATGTCTACAAACGGCATTCTTTTCTTCGGAG                         ATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT
genomic: ATCGATGTCTACAAACGGCATTCTTTTCTTCGGAGgtgaattcct ... ttggaaacagATGGAGAAGAAGCAAGCTGGTTCAGAAGATGAATACGATGTGGTTATCGTT