1 5' 3' | 2 5' 3' | 3 5' 3' |
TAGTGGTGTGCCGGTGAGTGGCTGCGCCTGATGGCCTCCAAGCGTATTCTGAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgccgacgttgtttttttgtttttgttgaatgcttgtttcttggagttctcctgtgtttgttcggttccgtgtgagtgcttggaatctggact...
species | Physcomitrella patens |
transcript | PP1S69_31V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208392917|gb|DC928603.1|DC928603
genomic: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: GGAGTTGAAAGA-TTGCAGAAGGACCCCCCGACATCATGCAGCGCT- GGCCTGTGGCCGAAGATATGTTCCATTGCCAGGCTACGATAATGGGACCTCEST: gi|100444703|gb|BY982532.1|BY982532
genomic: GGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCT-
EST: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208368971|gb|DC955056.1|DC955056
genomic: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: GACATCATGCAGCGCTN GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208354417|gb|DC953823.1|DC953823
genomic: GACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: AAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|100380283|gb|BY968931.1|BY968931
genomic: AAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208353619|gb|DC946357.1|DC946357
genomic: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: AAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208366616|gb|DC955650.1|DC955650
genomic: AAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: CGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAAT-GGACCTCEST: gi|208370020|gb|DC948115.1|DC948115
genomic: CGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: TCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|208390085|gb|DC942386.1|DC942386
genomic: TCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTCEST: gi|162193814|gb|FC369222.1|FC369222
genomic: GAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
EST: GACATCATGCAGCGCTG GGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
genomic: GACATCATGCAGCGCTGgtgagactgc ... tgtacgacagGGCCTGTGGCCGAAGATATGTTCCATTGGCAGGCTACGATAATGGGACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTGGTGTGCCGGTGAGTGGCTGCGCCTGATGGCCTCCAAGCGTATTCTGAAGGAGTTGAAAGATTTGCAGAAGGACCCCCCGACATCATGCAGCGCTGgtgagactgccgacgttgtttttttgtttttgttgaatgcttgtttcttggagttctcctgtgtttgttcggttccgtgtgagtgcttggaatctggact
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG