1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGTAGCTGGCGCTTCGGGGGTTTGTTGCGTTTCTCGGGATTCTGCGGGATATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTgtgggtgtggtgaagttcttcataatgttttggcaattacctgtgtttgatgcgtttttgacttgttttcctggggcggcgactgagtgtaatggagaat...
species | Physcomitrella patens |
transcript | PP1S68_186V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCT GTCAAAGAGAAGCAGAGGATTTGAATAAGGAGAGAGGAAAACATGGCTTTTEST: gi|162261716|gb|FC437005.1|FC437005
genomic: ATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTgtgggtgtgg ... ctgagattagGTCAAAGAGAAGCAGAGGATTTGAATAAGGAGAGAGGAAAACATGGCTTTT
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|162261716|gb|FC437005.1|FC437005
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|162261717|gb|FC437006.1|FC437006
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|162261717|gb|FC437006.1|FC437006
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|18342492|gb|BJ174527.1|BJ174527
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|18342492|gb|BJ174527.1|BJ174527
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|18354393|gb|BJ186449.1|BJ186449
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: ATCGTTGCGGTTTGGTGGGNTCTGGTGATTGGCGCAGCTTGGAGCTGCT GTCAAAGAGAAGCAGAGGATTTGAATAAGGAGAGAGGAAAACATGGCTTTTEST: gi|162218199|gb|FC395010.1|FC395010
genomic: ATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTgtgggtgtgg ... ctgagattagGTCAAAGAGAAGCAGAGGATTTGAATAAGGAGAGAGGAAAACATGGCTTTT
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGTEST: gi|162218199|gb|FC395010.1|FC395010
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
EST: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTGTGGGTGT
genomic: TATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGC--------Tgtgggtgtgg ... ctg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAGCTGGCGCTTCGGGGGTTTGTTGCGTTTCTCGGGATTCTGCGGGATATCGTTGCGGTTTGGTGGGCTCTGGTGATTTGCGCAGCTTGGAGCTGCTgtgggtgtggtgaagttcttcataatgttttggcaattacctgtgtttgatgcgtttttgacttgttttcctggggcggcgactgagtgtaatggagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT