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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGTGATCTGTCCTCGCCATTCCACGACGATCGTGTAGCTTTATTTTGATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattctctctgccttgtggtttcatatgtgctgtttgtcaactgtagtaggctgttgttgtgttgcatttgatgaatttctcttatgttgcacggt...

Basic information

species Physcomitrella patens
transcript PP1S63_54V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67574237|gb|BJ947061.1|BJ947061
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         TCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|208363504|gb|DC935269.1|DC935269
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         TCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|100356137|gb|BY946215.1|BY946215
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         -----G------G--ACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|100401167|gb|BY990864.1|BY990864
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATC----G---G                         T---TG-CT--AGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|100452688|gb|CJ975394.1|CJ975394
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         TCACTGTCTCCAGGGACANTCCATTCTTGAGCCATG
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATG
EST: gi|18328338|gb|BJ160342.1|BJ160342
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         TCACTGTCTCCAGGGATAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|208376362|gb|DC932272.1|DC932272
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         -----G------G--ACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|162235868|gb|FC412419.1|FC412419
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATC----G---G                         T---TG-CT--AGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|18346689|gb|BJ178734.1|BJ178734
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         TCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|162219070|gb|FC394653.1|FC394653
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATC----G---G                         T---TG-CT--AGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|100426836|gb|BY977387.1|BY977387
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         -----G------G--ACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
EST: gi|100402496|gb|BY954865.1|BY954865
EST:     GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAG                         -----G------G--ACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC
genomic: GATCTTAGAACTACGTGTCTGGTTCTGCTCCTTCGTCAATCGGTTGCTAGgtgagattct ... cactgtgcagTCACTGTCTCCAGGGACAATCCATTCTTGAGCCATGGCAAGGAAGAAGATC