1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGTTCGTAAAATCAAACCCCCTTTGAATCGCGCGTCTGGATCGGGCTCTCGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatcctgattctttcctcttttctatggcgttttcaaaatttgttttattcaaagacgatttgaaaagaaaagaaaaagcaaaaaaagaaaaaa...
species | Physcomitrella patens |
transcript | PP1S5_178V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGTCGTTGCGTTCCNGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|208352291|gb|DC906352.1|DC906352
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|208370833|gb|DC936209.1|DC936209
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|67576584|gb|BJ949408.1|BJ949408
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|162232771|gb|FC408178.1|FC408178
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|19789615|gb|BQ041411.1|BQ041411
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|208368697|gb|DC940034.1|DC940034
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|67508011|gb|BJ940885.1|BJ940885
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGEST: gi|67508664|gb|BJ941525.1|BJ941525
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
EST: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGG TTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
genomic: CGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatc ... ttgtcaacagTTTCACCAATACCAGGTGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTCGTAAAATCAAACCCCCTTTGAATCGCGCGTCTGGATCGGGCTCTCGTCGTCGTTGCGTTCCGGAAACTTTCAGCTGTCAGCCATGAGTTTCCGGgttagtaatcctgattctttcctcttttctatggcgttttcaaaatttgttttattcaaagacgatttgaaaagaaaagaaaaagcaaaaaaagaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaaa