1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGAGGTGCACGAGTGTTATAACTACAGCCCTTGTCACGGTCGTGCTCTTCTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaaccgttgtgtgtgtcgtctgagtgagtccgtgctgcagctttggtggggcggtgtgttgctgttggatcgattctggttactgctctctcgtc...
species | Physcomitrella patens |
transcript | PP1S5_176V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100385085|gb|BY987548.1|BY987548
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|18330672|gb|BJ162678.1|BJ162678
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|208374775|gb|DC932044.1|DC932044
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67702897|gb|BJ963130.1|BJ963130
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67716918|gb|BJ967177.1|BJ967177
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67709502|gb|BJ965318.1|BJ965318
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67709253|gb|BJ965069.1|BJ965069
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCAT-C-CTCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|162250920|gb|FC425742.1|FC425742
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: GGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67703638|gb|BJ963871.1|BJ963871
genomic: GGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|162151884|gb|FC328130.1|FC328130
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100439025|gb|BY980055.1|BY980055
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67717718|gb|BJ967977.1|BJ967977
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67709482|gb|BJ965298.1|BJ965298
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67703352|gb|BJ963585.1|BJ963585
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67701600|gb|BJ961833.1|BJ961833
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100452001|gb|CJ975050.1|CJ975050
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100402500|gb|BY954867.1|BY954867
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|18348093|gb|BJ180140.1|BJ180140
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|208384180|gb|DC911288.1|DC911288
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100443650|gb|BY963747.1|BY963747
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|162260735|gb|FC435387.1|FC435387
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100450396|gb|CJ974242.1|CJ974242
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100385223|gb|BY950815.1|BY950815
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|100399790|gb|BY972894.1|BY972894
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGGEST: gi|67717986|gb|BJ968245.1|BJ968245
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
EST: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAG GAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
genomic: CTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaacc ... tggcgttcagGAGCACATGCAGGAGAATGGACACAAGAAAGTGAAGACTGTCGACGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGGTGCACGAGTGTTATAACTACAGCCCTTGTCACGGTCGTGCTCTTCTTCTTCCTCCTCTACCATGGCCAACCCATCCACGCGAGAAGCGTTCCAGgtactgaaccgttgtgtgtgtcgtctgagtgagtccgtgctgcagctttggtggggcggtgtgttgctgttggatcgattctggttactgctctctcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC