1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGTCCGATGTGCAAATGATGCTGGCTGCCGATGTGCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattctcattagggttattccttagacaatttctagttgtggaatgggctcggtgtcgtcgttgtcgtcgtcttcttgcttggtttacggatgggtgcgcaatgcatgcagcgttgttcgtaacgttgcgtgccggtgctgccctccggtatgtgtggtggtaacaatgtggtcgcatcggtggacag
species | Physcomitrella patens |
transcript | PP1S59_133V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|100429439|gb|BY959564.1|BY959564
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|18329684|gb|BJ161690.1|BJ161690
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|100403042|gb|BY973478.1|BY973478
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|100439438|gb|BY961933.1|BY961933
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|67716287|gb|BJ966547.1|BJ966547
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|162160077|gb|FC335947.1|FC335947
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|208399572|gb|DC908753.1|DC908753
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|162248750|gb|FC422822.1|FC422822
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|67569851|gb|BJ942675.1|BJ942675
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTGEST: gi|18324853|gb|BJ156848.1|BJ156848
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
EST: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATG GCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
genomic: GAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattc ... cggtggacagGCATTTTTATTATCAACGTTGGCAAGACCTACGAGAAGCTTGAGCTTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCCGATGTGCAAATGATGCTGGCTGCCGATGTGCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattctcattagggttattccttagacaatttctagttgtggaatgggctcggtgtcgtcgttgtcgtcgtcttcttgcttggtttacggatgggtgcgcaatgcatgcagcgttgttcgtaacgttgcgtgccggtgctgccctccggtatgtgtggtggtaacaatgtggtcgcatcggtggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG