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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTCGTCGTTGTTGTTGCCGTTGTCGTCACCATTTCTGCGTTCATCATGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatccttatggtacccaccgaaggatcttgaattcgtgggagtgctgtcatgtggacagtccacgatgactgtggttggaagaccagaagagactt...

Basic information

species Physcomitrella patens
transcript PP1S56_71V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352647|gb|BJ184702.1|BJ184702
EST:     TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG                         AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: gi|100417012|gb|BY993200.1|BY993200
EST:     TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG                         AATTTCAACAGCGGGGAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: gi|162158967|gb|FC333995.1|FC333995
EST:     TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG                         AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: gi|100387894|gb|BY970639.1|BY970639
EST:     TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG                         AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG