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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTGATAGCAGAAGAATTGTGGGGTTGTCATTTTCATCAGCCAGAGTGGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGATgtaagcatttcttattccttttttttgtgcatttccgtttgctatgtagcagcattgatttgcttgtgatgacctgtcgacaaattggggtaaatcctgc...

Basic information

species Physcomitrella patens
transcript PP1S56_263V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352746|gb|BJ184801.1|BJ184801
EST:     GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGAT                         GTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
genomic: GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGATgtaagcattt ... tggtttgcagGTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
EST: gi|18359929|gb|BJ191990.1|BJ191990
EST:     GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGAT                         GTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
genomic: GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGATgtaagcattt ... tggtttgcagGTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
EST: gi|67508098|gb|BJ940969.1|BJ940969
EST:     GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGAT                         GTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
genomic: GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGATgtaagcattt ... tggtttgcagGTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
EST: gi|162214885|gb|FC391020.1|FC391020
EST:     GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGAT                         GTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG
genomic: GGGTGTTAAACTCGCGACAGTCAGTGTCGATTGTTTTTCTCAAAATGGATgtaagcattt ... tggtttgcagGTCTCTATTTCGTTGGTGAAGAACGTGATACTTCTAGATTCTGAGGGGAAG