1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCTCTCATGTTTGCTTGTACCAGTCGACAGCAATGGAGGAGGCTTGCGGGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGTTTTTTTAGTCAACGCAGgtgaggctgaaagtgcaagtctctttcttggaggatgcgttttcttttttgtttctttcttaccttgagttggcagagtttgtgtagcactgtctgtaatgagttgttgattggcgcgatgatgcggaggtttgtgacag
species | Physcomitrella patens |
transcript | PP1S55_144V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGNNNNNNNAGTCAACGCAG GAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGGEST: gi|18367860|gb|BJ199943.1|BJ199943
genomic: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGTTTTTTTAGTCAACGCAGgtgaggctga ... tttgtgacagGAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGG
EST: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGNNNNNNNAGTCAACGCAG GAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGGEST: gi|18355303|gb|BJ187362.1|BJ187362
genomic: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGTTTTTTTAGTCAACGCAGgtgaggctga ... tttgtgacagGAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGG
EST: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGNNNNNNNAGTCAACGCAG GAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGG
genomic: GGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGTTTTTTTAGTCAACGCAGgtgaggctga ... tttgtgacagGAATCGCGCCGGGAGGTTTCGGAATGGTCCGAGTGTGTTGGAGGGATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTCTCATGTTTGCTTGTACCAGTCGACAGCAATGGAGGAGGCTTGCGGGTCGCAGTCACGAGAGAGGTTGAGGAGGCGGTTTTTTTAGTCAACGCAGgtgaggctgaaagtgcaagtctctttcttggaggatgcgttttcttttttgtttctttcttaccttgagttggcagagtttgtgtagcactgtctgtaatgagttgttgattggcgcgatgatgcggaggtttgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG