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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTGCCCAAGTGTAATGTAGCTCTGGTAGAACATCAACTGGCGGAGGGTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgatattctcactcaatgctttgcgccctgtcgttcgccagtttgcgccccgtagtcttttccattccacagcagcactgctaaagagtttgaag...

Basic information

species Physcomitrella patens
transcript PP1S55_141V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424777|gb|BY976810.1|BY976810
EST:     GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG                         CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTG
EST: gi|208345632|gb|DC909302.1|DC909302
EST:     GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG                         CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: gi|100403940|gb|BY955175.1|BY955175
EST:     GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG                         CCTGGCGACGTGNCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: gi|162185292|gb|FC360866.1|FC360866
EST:     GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG                         CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: gi|100393119|gb|BY989753.1|BY989753
EST:     GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG                         CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG