1 5' 3' | 2 5' 3' | 3 5' 3' |
GTAGCTTGTCTTTGCATCTTACTCTGTCGCGGATTGTCACTGCAAGTGTACTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatctcgcaagtcatgtcgaccgccatgcttgcgtgagaatttaggcgattcgccaaaatggtttgagagtgaacgtcgaagttgttggtgctgtactctcgtggtggattatttcatttcattttattttgtttcgtgtcttcgtgcatggaaggaatcag
species | Physcomitrella patens |
transcript | PP1S55_121V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|18345013|gb|BJ177054.1|BJ177054
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGTEST: gi|18353101|gb|BJ185156.1|BJ185156
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|18343750|gb|BJ175788.1|BJ175788
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|100435598|gb|BY960994.1|BY960994
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGTEST: gi|208378004|gb|DC906933.1|DC906933
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|100365534|gb|BY966644.1|BY966644
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|18351851|gb|BJ183903.1|BJ183903
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|18352238|gb|BJ184292.1|BJ184292
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGTEST: gi|18357185|gb|BJ189244.1|BJ189244
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGTEST: gi|18343690|gb|BJ175728.1|BJ175728
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTEST: gi|100365003|gb|BY966762.1|BY966762
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
EST: CTGGCTCCCTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGTEST: gi|18348251|gb|BJ180298.1|BJ180298
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCTGGTTGGT
EST: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAG GAATCAGGATGGAATCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
genomic: CTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatct ... aaggaatcagGA-T--GGA---A-TCAGCCGCAGGAAGAACACAGAGAGCACTGGCAGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCTTGTCTTTGCATCTTACTCTGTCGCGGATTGTCACTGCAAGTGTACTGGCTCCTTGTCTGGCATGTGATTACCTGTGATCTGATAGTGCAGCAAGgtgagtatctcgcaagtcatgtcgaccgccatgcttgcgtgagaatttaggcgattcgccaaaatggtttgagagtgaacgtcgaagttgttggtgctgtactctcgtggtggattatttcatttcattttattttgtttcgtgtcttcgtgcatggaaggaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG