1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTGCGGTGGATTACTGCTCTGCTCGAGCGAGAAATTGTGCTTGTTGTTAGTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgagatcatgggattgtataggatgcgacgaggagatcttggcagagcggtcgaggttgtggtatgattttttagcgatgttgaggttattaagt...
species | Physcomitrella patens |
transcript | PP1S54_317V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAG GACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCATEST: gi|67576799|gb|BJ949623.1|BJ949623
genomic: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgaga ... gtttgtgtagGACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
EST: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAG GACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCATEST: gi|67571047|gb|BJ943871.1|BJ943871
genomic: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgaga ... gtttgtgtagGACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
EST: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAG GACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCATEST: gi|100427036|gb|BY958941.1|BY958941
genomic: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgaga ... gtttgtgtagGACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
EST: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAG GACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCATEST: gi|100436023|gb|BY979341.1|BY979341
genomic: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgaga ... gtttgtgtagGACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
EST: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAG GACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
genomic: GTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgaga ... gtttgtgtagGACTCGTTGATGCCGTCACTTTATCTGAGTTGGAGAGTTCATTCAACGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCGGTGGATTACTGCTCTGCTCGAGCGAGAAATTGTGCTTGTTGTTAGTCTTGTCGCTGGGGAGCTTTGCCGATTCATCGCCGTAGTATCAACTTAGgtaagcgagatcatgggattgtataggatgcgacgaggagatcttggcagagcggtcgaggttgtggtatgattttttagcgatgttgaggttattaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT